Readings

Further details on a variety of readings.

Altshcul et al. 1990: Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic Local Alignment Search Tool. J. Mol. Bio 215, pp. 403-410.
Asara et al. 2007: Asara, J. M., Schweitzer, M. H., Freimark, L. M., Phillips, M., Cantley, L. C. (2007). Protein Sequences from Mastodon and Tyrannosaurus Rex Revealed by Mass Spectrometry. Science 13 April 2007: Vol. 316. no. 5822, pp. 280 - 285 DOI: 10.1126/science.1137614.; http://www.sciencemag.org/cgi/content/full/316/5822/280
Kellis et al. 2003: Kellis, M., Patterson, N., Endrizzi, M., Birren, B., & Lander, E. S. (2003). Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature, Vol. 432, pp. 241-254. 15 May 2003.; PDF: http://web.mit.edu/manoli/www/publications/Kellis_Nature_03.pdf; Supp. Info: http://www.nature.com/nature/journal/v423/n6937/suppinfo/nature01644.html; Supp. Info: http://www.broadinstitute.org/annotation/fungi/comp_yeasts/
Markham et al. 1998: Markham, R.B., Wang, W.C., Weisstein, A. E., Wang, Z., Munoz, A., Templeton, A., Margolick, J., Vlahov, D., Quinn, T., Farzadegan, H., Yu, X. F. (1998). Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline. Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12568-73.; http://www.pnas.org/content/95/21/12568.full
Needleman & Wunsch 1970: Needleman, S. B. and Wunsch, C. D. (1970). A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. J. Mol. Biol. 48 pp. 443-453.; http://www-helix.stanford.edu/bmi214/articles/NeedlemanWunsch1970.pdf
Pevzner et al. 2008: Pevzner, P. A., Kim, S., and Ng, J. Comment on Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry Science 22 August 2008: Vol. 321. no. 5892, p. 1040 DOI: 10.1126/science.1155006; http://www.sciencemag.org/cgi/content/full/321/5892/1040b
Ratliff 2009: Ratliff, E. (2009). Origin of a Species: How a T. Rex Femur Sparked a Scientific Smackdown. Wired 17.07.; http://www.wired.com/medtech/genetics/magazine/17-07/ff_originofspecies
Schweitzer et al. 2009.: Mary H. Schweitzer, Wenxia Zheng, Chris L. Organ, Recep Avci, Zhiyong Suo, Lisa M. Freimark, Valerie S. Lebleu, Michael B. Duncan, Matthew G. Vander Heiden, John M. Neveu, William S. Lane, John S. Cottrell, John R. Horner, Lewis C. Cantley, Raghu Kalluri, John M. Asara (2009). Biomolecular Characterization and Protein Sequences of the Campanian Hadrosaur B. canadensis. Science 1 May 2009: Vol. 324. no. 5927, pp. 626 - 631 DOI: 10.1126/science.1165069; http://www.sciencemag.org/cgi/content/full/324/5927/626

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